Serdar Durdagi: search on Z-Library

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1

In silico characterization of adipokinetic hormone receptor and screening for pesticide candidates against stick insect, Carausius morosus

Birgul Iyison, Necla, Sinmaz, Merve Gizem, Duan Sahbaz, Burcin, Shahraki, Aida, Aksoydan, Busecan, Durdagi, Serdar

Journal:

Journal of Molecular Graphics and Modelling

Year:

2020

File:

PDF, 1.15 MB

2020

2

Investigation of Inhibition Mechanism of Chemokine Receptor CCR5 by Micro-second Molecular Dynamics Simulations

Salmas, Ramin Ekhteiari, Yurtsever, Mine, Durdagi, Serdar

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

3

Identifying new piperazine-based PARP1 inhibitors using text mining and integrated molecular modeling approaches

Sahin, Kader, Durdagi, Serdar

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2020

File:

PDF, 2.20 MB

2020

4

Discovery of Klotho peptide antagonists against Wnt3 and Wnt3a target proteins using combination of protein engineering, protein–protein docking, peptide docking and molecular dynamics simulations

Mirza, Shaher Bano, Ekhteiari Salmas, Ramin, Fatmi, M. Qaiser, Durdagi, Serdar

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

5

In vitro and in silico approaches to appraise Polygonum maritimum L. as a source of innovative products with anti-ageing potential

Rodrigues, Maria João, Slusarczyk, Sylwester, Pecio, Łukasz, Matkowski, Adam, Salmas, Ramin Ekhteiari, Durdagi, Serdar, Pereira, Catarina, Varela, João, Barreira, Luísa, Custódio, Luísa

Journal:

Industrial Crops and Products

Year:

2018

Language:

english

File:

PDF, 692 KB

english, 2018

6

Novel MAO-B Hit Inhibitors Using Multidimensional Molecular Modeling Approaches and Application of Binary QSAR Models for Prediction of their Therapeutic Activity and Toxic Effects

Is, Yusuf Serhat, Durdagi, Serdar, Aksoydan, Busecan, Yurtsever, Mine

Journal:

ACS Chemical Neuroscience

Year:

2018

Language:

english

File:

PDF, 3.71 MB

english, 2018

7

Does the donor–acceptor concept work for designing synthetic metals?

Ulrike Salzner, Ozan Karaltı, Serdar Durdaği

Journal:

Journal of Molecular Modeling

Year:

2006

Language:

english

File:

PDF, 283 KB

english, 2006

8

An effort to discover the preferred conformation of the potent AMG3 cannabinoid analog when reaching the active sites of the cannabinoid receptors

Serdar Durdagi, Manthos G. Papadopoulos, Thomas Mavromoustakos

Journal:

European Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 1.36 MB

english, 2012

9

Development and Validation Studies of Universal Pharmacophore Models for hERG Channel Openers

Durdagi, Serdar, Patterson, Matthew, Noskov, Sergei Y.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

10

Investigation of inhibition of human glucose 6-phosphate dehydrogenase by some 99mTc chelators by in silico and in vitro methods

Şahin, Ali, Şentürk, Murat, Salmas, Ramin E., Durdagi, Serdar, Ayan, Arif, Karagölge, Ali, Mestanoğlu, Mert

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2016

Language:

english

File:

PDF, 884 KB

english, 2016

11

Synthesis, Anticholinesterase Activity and Molecular Modeling Studies of Novel Carvacrol Substituted Amide Derivatives

Zengin Kurt, Belma, Durdagi, Serdar, Celebi, Gulsen, Ekhteiari Salmas, Ramin, Sonmez, Fatih

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2019

File:

PDF, 1.46 MB

2019

12

Synthesis, Anticholinesterase Activity and Molecular Modeling Studies of Novel Carvacrol Substituted Amide Derivatives

Zengin Kurt, Belma, Durdagi, Serdar, Celebi, Gulsen, Ekhteiari Salmas, Ramin, Sonmez, Fatih

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2019

Language:

english

File:

PDF, 1.46 MB

english, 2019

13

Structural refinement of the hERG1 pore and voltage-sensing domains with ROSETTA-membrane and molecular dynamics simulations

Julia Subbotina, Vladimir Yarov-Yarovoy, James Lees-Miller, Serdar Durdagi, Jiqing Guo, Henry J. Duff, Sergei Yu. Noskov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1018 KB

english, 2010

14

Molecular insights into the AT1antagonism based on biophysical and in silico studies of telmisartan

Kritsi, Eftichia, Potamitis, Constantinos, Durdagi, Serdar, Zoumpoulakis, Panagiotis, Golic Grdadolnik, Simona, Mavromoustakos, Thomas

Journal:

Medicinal Chemistry Research

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

15

The discovery of new potent non-peptide Angiotensin II AT1 receptor blockers: A concise synthesis, molecular docking studies and biological evaluation of N-substituted 5-butylimidazole derivatives

Agelis, George, Resvani, Amalia, Durdagi, Serdar, Spyridaki, Katerina, Tůmová, Tereza, Slaninová, Jiřina, Giannopoulos, Panagiotis, Vlahakos, Demetrios, Liapakis, George, Mavromoustakos, Thomas, Matso

Journal:

European Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 1.63 MB

english, 2012

16

Characterization, In Vivo Evaluation and Molecular Modeling of Different Propofol-Cyclodextrin Complexes to Assess Their Drug Delivery Potential at The Blood-Brain Barrier Level

Shityakov, Sergey, Salmas, Ramin Ekhteiari, Durdagi, Serdar, Salvador, Ellaine, Pápai, Katalin, Yañez-Gascón, María Josefa, Perez-Sanchez, Horacio, Puskás, István ‎, Roewer, Norbert, Förster, Carola,

Journal:

Journal of Chemical Information and Modeling

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016

17

The effects of pollen, propolis, and caffeic acid phenethyl ester on tyrosine hydroxylase activity and total RNA levels in hypertensive rats caused by nitric oxide synthase inhibition: experimental, docking and molecular dynamic studies

Ekhteiari Salmas, Ramin, Durdagi, Serdar, Gulhan, Mehmet Fuat, Duruyurek, Merve, Abdullah, Huda I., Selamoglu, Zeliha

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

18

Cholesterol up-regulates neuronal G protein-gated inwardly rectifying potassium (GIRK) channel activity in the hippocampus

Bukiya, Anna N., Durdagi, Serdar, Noskov, Sergei, Rosenhouse-Dantsker, Avia

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

19

Analysis of the Glutamate Agonist LY404,039 Binding to Nonstatic Dopamine Receptor D2 Dimer Structures and Consensus Docking

Salmas, Ramin Ekhteiari, Seeman, Philip, Aksoydan, Busecan, Erol, Ismail, Kantarcioglu, Isik, Stein, Matthias, Yurtsever, Mine, Durdagi, Serdar

Journal:

ACS Chemical Neuroscience

Year:

2017

Language:

english

File:

PDF, 3.50 MB

english, 2017

20

Structural modeling of the N-terminal signal–receiving domain of IκBα

Yazdi, Samira, Durdagi, Serdar, Naumann, Michael, Stein, Matthias

Journal:

Frontiers in Molecular Biosciences

Year:

2015

Language:

english

File:

PDF, 4.74 MB

english, 2015

21

Integration of Text Mining and Binary QSAR Models for Novel Anti-Hypertensive Antagonist Scaffolds

Durdagi, Serdar, Erol, Ismail, Dogan, Berna, Berkay Sen, Taha

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 47 KB

english, 2019

22

Synthesis, Biological Activity and Multiscale Molecular Modeling Studies of Bis-coumarins as Selective Carbonic Anhydrase IX and XII Inhibitors with Effective Cytotoxicity against Hepatocellular Carcinoma

Zengin Kurt, Belma, Dag, Aydan, Doğan, Berna, Durdagi, Serdar, Angeli, Andrea, Nocentini, Alessio, Supuran, Claudiu T., Sonmez, Fatih

Journal:

Bioorganic Chemistry

Year:

2019

Language:

english

File:

PDF, 1.92 MB

english, 2019

23

Protein–Protein Interactions: Inhibition of Mammalian Carbonic Anhydrases I–XV by the Murine Inhibitor of Carbonic Anhydrase and Other Members of the Transferrin Family

Durdagi, Serdar, Vullo, Daniela, Pan, Peiwen, Kähkönen, Niklas, Määttä, Juha A., Hytönen, Vesa P., Scozzafava, Andrea, Parkkila, Seppo, Supuran, Claudiu T.

Journal:

Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 534 KB

english, 2012

24

Structure-Based Design of hERG-Neutral Antihypertensive Oxazalone and Imidazolone Derivatives

Aksoydan, Busecan, Kantarcioglu, Isik, Erol, Ismail, Salmas, Ramin Ekhteiari, Durdagi, Serdar

Journal:

Journal of Molecular Graphics and Modelling

Year:

2017

Language:

english

File:

PDF, 231 KB

english, 2017

25

Novel Tumor Necrosis Factor-α (TNF-α) Inhibitors from Small Molecule Library Screening for their Therapeutic Activity Profiles against Rheumatoid Arthritis using Target-Driven Approaches and Binary QSAR Models

Zaka, Mehreen, Abbasi, Bilal Haider, Durdagi, Serdar

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

26

Combined Receptor and Ligand-Based Approach to the Universal Pharmacophore Model Development for Studies of Drug Blockade to the hERG1 Pore Domain

Durdagi, Serdar, Duff, Henry J., Noskov, Sergei Yu.

Journal:

Journal of Chemical Information and Modeling

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

27

Modeling of Open, Closed, and Open-Inactivated States of the hERG1 Channel: Structural Mechanisms of the State-Dependent Drug Binding

Durdagi, Serdar, Deshpande, Sumukh, Duff, Henry J, Noskov, Sergei Y.

Journal:

Journal of Chemical Information and Modeling

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

28

A QM Protein-Ligand Investigation of Anti-psychotic Drugs with the Dopamine D2 Receptor (D2R)

Ekhteiari Salmas, Ramin, Serhat Is, Yusuf, Durdagi, Serdar, Stein, Matthias, Yurtsever, Mine

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2017

Language:

english

File:

PDF, 3.88 MB

english, 2017

29

Structural and dynamical properties of Bi3+ in water

Serdar Durdagi, Thomas S. Hofer, Bernhard R. Randolf, Bernd M. Rode

Journal:

Chemical Physics Letters

Year:

2005

Language:

english

File:

PDF, 160 KB

english, 2005

30

An efficient synthesis of a rationally designed 1,5 disubstituted imidazole AT1Angiotensin II receptor antagonist: reorientation of imidazole pharmacophore groups in losartan reserves high receptor affinity and confirms docking studies

George Agelis, Panagiota Roumelioti, Amalia Resvani, Serdar Durdagi, Maria-Eleni Androutsou, Konstantinos Kelaidonis, Demetrios Vlahakos, Thomas Mavromoustakos, John Matsoukas

Journal:

Journal of Computer-Aided Molecular Design

Year:

2010

Language:

english

File:

PDF, 504 KB

english, 2010

31

Elucidation of Conformational States, Dynamics, and Mechanism of Binding in Human κ-Opioid Receptor Complexes

Leonis, Georgios, Avramopoulos, Aggelos, Salmas, Ramin Ekhteiari, Durdagi, Serdar, Yurtsever, Mine, Papadopoulos, Manthos G.

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 3.14 MB

english, 2014

32

Synthesis of Some Novel Norbornene-Fused Pyridazines as Potent Inhibitors of Carbonic Anhydrase and Acetylcholinesterase

Kocak, Ramazan, Akın, Esra Turan, Kalın, Pınar, Talaz, Oktay, Saracoglu, Nurullah, Dastan, Arif, Gülcin, Ilhami, Durdagi, Serdar

Journal:

Journal of Heterocyclic Chemistry

Year:

2015

Language:

english

File:

PDF, 577 KB

english, 2015

33

Role of the pH in state-dependent blockade of hERG currents

Wang, Yibo, Guo, Jiqing, Perissinotti, Laura L., Lees-Miller, James, Teng, Guoqi, Durdagi, Serdar, Duff, Henry J., Noskov, Sergei Yu.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.71 MB

english, 2016

34

Biological Insights of the Dopaminergic Stabilizer ACR16 at the Binding Pocket of Dopamine D2 Receptor

Ekhteiari Salmas, Ramin, Seeman, Philip, Aksoydan, Busecan, Stein, Matthias, Yurtsever, Mine, Durdagi, Serdar

Journal:

ACS Chemical Neuroscience

Year:

2017

Language:

english

File:

PDF, 5.43 MB

english, 2017

35

Structure-Based Design of hERG-Neutral Antihypertensive Oxazalone and Imidazolone Derivatives

Aksoydan, Busecan, Kantarcioglu, Isik, Erol, Ismail, Salmas, Ramin Ekhteiari, Durdagi, Serdar

Journal:

Journal of Molecular Graphics and Modelling

Year:

2017

Language:

english

File:

PDF, 3.46 MB

english, 2017

36

Combined 3D QSAR and molecular docking studies to reveal novel cannabinoid ligands with optimum binding activity

Serdar Durdagi, Manthos G. Papadopoulos, Demetris P. Papahatjis, Thomas Mavromoustakos

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2007

Language:

english

File:

PDF, 736 KB

english, 2007

37

Development of accurate binding affinity predictions of novel renin inhibitors through molecular docking studies

Aggeliki Politi, Serdar Durdagi, Panagiota Moutevelis-Minakakis, George Kokotos, Thomas Mavromoustakos

Journal:

Journal of Molecular Graphics and Modelling

Year:

2010

Language:

english

File:

PDF, 705 KB

english, 2010

38

Comparison of thermal effects of stilbenoid analogs in lipid bilayers using differential scanning calorimetry and molecular dynamics: correlation of thermal effects and topographical position with antioxidant activity

Catherine Koukoulitsa, Serdar Durdagi, Eleni Siapi, Carolina Villalonga-Barber, Xanthippi Alexi, Barry R. Steele, Maria Micha-Screttas, Michael N. Alexis, Anna Tsantili-Kakoulidou, Thomas Mavromoustak

Journal:

European Biophysics Journal

Year:

2011

Language:

english

File:

PDF, 715 KB

english, 2011

39

Nanoscale enzyme inhibitors: Fullerenes inhibit carbonic anhydrase by occluding the active site entrance

Alessio Innocenti, Serdar Durdagi, Nadjmeh Doostdar, T. Amanda Strom, Andrew R. Barron, Claudiu T. Supuran

Journal:

Bioorganic & Medicinal Chemistry

Year:

2010

Language:

english

File:

PDF, 567 KB

english, 2010

40

The Application of 3D-QSAR Studies for Novel Cannabinoid Ligands Substituted at the C1‘ Position of the Alkyl Side Chain on the Structural Requirements for Binding to Cannabinoid Receptors CB1 and CB2

Durdagi, Serdar, Kapou, Agnes, Kourouli, Therapia, Andreou, Thanos, Nikas, Spyros P., Nahmias, Victoria R., Papahatjis, Demetris P., Papadopoulos, Manthos G., Mavromoustakos, Thomas

Journal:

Journal of Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 432 KB

english, 2007

41

3D QSAR/CoMFA and CoMSIA Studies on Antileukemic Steroidal Esters Coupled with Conformationally Flexible Nitrogen Mustards

Kapou, Agnes, Benetis, Nikolas-P., Durdagi, Serdar, Nikolaropoulos, Sotiris, Mavromoustakos, Thomas

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 984 KB

english, 2008

42

Synthesis, anticholinesterase activity and molecular modeling study of novel carbamate-substituted thymol/carvacrol derivatives

Kurt, Belma Zengin, Gazioglu, Isil, Dag, Aydan, Salmas, Ramin Ekhteiari, Kayık, Gülru, Durdagi, Serdar, Sonmez, Fatih

Journal:

Bioorganic & Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

43

Leveraging NMR and X-ray Data of the Free Ligands to Build Better Drugs Targeting Angiotensin II Type 1 G-Protein Coupled Receptor

Kellici, Tahsin, Ntountaniotis, Dimitrios, Kritsi, Eftichia, Zervou, Maria, Zoumpoulakis, Panagiotis, Potamitis, Constantinos, Durdagi, Serdar, Salmas, Ramin, Ergun, Gizem, Gokdemir, Ebru, Halabalaki,

Journal:

Current Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

44

An Integrated Computational Approach for the Discovery of Ubiquitin Specific Protease 7 (USP7) Inhibitors as Potential Cancer Therapies

Durdagi, Serdar

Journal:

Biophysical Journal

Year:

2020

Language:

english

File:

PDF, 47 KB

english, 2020

45

Potent novel inhibitors against hepatitis C virus NS3 (HCV NS3 GT-3a) protease domain

Ikram, Saima, Ahmad, Jamshaid, Rehman, Irshad-Ur, Durdagi, Serdar

Journal:

Journal of Molecular Graphics and Modelling

Year:

2020

File:

PDF, 4.06 MB

2020

46

Partial interdigitation of lipid bilayers

Thomas Mavromoustakos, Petros Chatzigeorgiou, Catherine Koukoulitsa, Serdar Durdagi

Journal:

International Journal of Quantum Chemistry

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

47

Mechanism of K + /Na + selectivity in potassium channels from the perspective of the non-selective bacterial channel NaK

Durdagi, Serdar, Noskov, Sergei Y.

Journal:

Year:

2011

Language:

english

File:

PDF, 510 KB

english, 2011

48

In Silico Design of Novel hERG-neutral Sildenafil-like PDE5 Inhibitors

Kayık, Gülru, Tuzun, Nurcan, Durdagi, Serdar

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2016

Language:

english

File:

PDF, 2.94 MB

english, 2016

49

Oligomerization and Cooperativity in GPCRs from the Perspective of the Angiotensin AT1 and Dopamine D2 Receptors

Durdagi, Serdar, Erol, Ismail, Salmas, Ramin Ekhteiari, Aksoydan, Busecan, Kantarcioglu, Isik

Journal:

Neuroscience Letters

Year:

2018

Language:

english

File:

PDF, 402 KB

english, 2018

50

Kinetic and docking studies of phenol-based inhibitors of carbonic anhydrase isoforms I, II, IX and XII evidence a new binding mode within the enzyme active site

Serdar Durdagi, Murat Şentürk, Deniz Ekinci, Halis Türker Balaydın, Süleyman Göksu, Ö. İrfan Küfrevioğlu, Alessio Innocenti, Andrea Scozzafava, Claudiu T. Supuran

Journal:

Bioorganic & Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 1.67 MB

english, 2011

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